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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2859186_2863400_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2859186 - 2863400
Intron Length:
4215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCAGC
5'SS Class:
major
3'SS Sequence:
TCGTGTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TTGTGGATAATC
Flanking Amino Acid:
VQDKVLALIQAWADAFRSSP
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
67.3
44.3
Major BPS
68.7
0.46
1
71.3
34
Major PPT
81
0.7
0.9
72.6
42.4
Minor 5ss
38.7
-1.3
3.1
52.2
44.6
Minor BPS
44.3
-0.4
2.5
62.66
43.4

Associated Gene:

Gene:
TOM1L2
Ensembl Gene ID:
ENSAPLG00000008391
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034159
2856686 - 2886550
29865
ENSAPLT00000031612
2856686 - 2886550
29865
ENSAPLT00000028754
2856813 - 2886550
29738
ENSAPLT00000008771
2848363 - 2885550
37188
ENSAPLT00000043210
2855635 - 2885550
29916