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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2863536_2864500_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2863536 - 2864500
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TCTGATGTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
AGCTTTTGAACT
Flanking Amino Acid:
ALSPIHTPQRSVPEVDPAAN
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
73.2
39.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
65.8
0.36
1.1
61.1
44.3
Minor 5ss
40.1
-1.1
2.8
44.4
43.5
Minor BPS
59.9
0.39
1.4
71.38
39.7

Associated Gene:

Gene:
TOM1L2
Ensembl Gene ID:
ENSAPLG00000008391
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031612
2856686 - 2886550
29865
ENSAPLT00000028754
2856813 - 2886550
29738
ENSAPLT00000008771
2848363 - 2885550
37188
ENSAPLT00000043210
2855635 - 2885550
29916
ENSAPLT00000034159
2856686 - 2886550
29865