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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2865549_2868104_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2865549 - 2868104
Intron Length:
2556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCTT
5'SS Class:
strong_major
3'SS Sequence:
GCATTCCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CTTATCAGAATG
Flanking Amino Acid:
EDSSDLELLQELNRTCRAMQ
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
75.3
40.4
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
72.3
0.5
0.9
66.2
35.6
Minor 5ss
36.8
-1.5
3.5
56.4
47.8
Minor BPS
46.3
-0.4
1.8
53.48
41.6

Associated Gene:

Gene:
TOM1L2
Ensembl Gene ID:
ENSAPLG00000008391
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031612
2856686 - 2886550
29865
ENSAPLT00000028754
2856813 - 2886550
29738
ENSAPLT00000008771
2848363 - 2885550
37188
ENSAPLT00000043210
2855635 - 2885550
29916
ENSAPLT00000034159
2856686 - 2886550
29865