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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2870750_2871296_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2870750 - 2871296
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TGTGCCCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTTAC
U12 Branch Point Sequence:
TGTGCCCCAACA
Flanking Amino Acid:
GRSTQNASNGVLNEVTEDNL
Intron Amino Acid Position:
288

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
78.8
35.5
Major BPS
64.9
0.37
0.9
55.4
32.3
Major PPT
66
0.36
1
59.3
37
Minor 5ss
36.6
-1.5
2.6
39.1
38.9
Minor BPS
51.8
0.05
2
69.53
42.3

Associated Gene:

Gene:
TOM1L2
Ensembl Gene ID:
ENSAPLG00000008391
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028754
2856813 - 2886550
29738
ENSAPLT00000008771
2848363 - 2885550
37188
ENSAPLT00000043210
2855635 - 2885550
29916
ENSAPLT00000034159
2856686 - 2886550
29865
ENSAPLT00000031612
2856686 - 2886550
29865