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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2871421_2871796_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2871421 - 2871796
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGCTGTTTCATG
Flanking Amino Acid:
SSLSSQLAGLDLGTNSVSGT
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
89.4
0.89
0.7
84.5
30.4
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
44.9
-0.5
2.2
50.88
44.4

Associated Gene:

Gene:
TOM1L2
Ensembl Gene ID:
ENSAPLG00000008391
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028754
2856813 - 2886550
29738
ENSAPLT00000008771
2848363 - 2885550
37188
ENSAPLT00000043210
2855635 - 2885550
29916
ENSAPLT00000034159
2856686 - 2886550
29865
ENSAPLT00000031612
2856686 - 2886550
29865