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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2871915_2873821_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
2871915 - 2873821
Intron Length:
1907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTGG
5'SS Class:
major
3'SS Sequence:
TCCTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTCTAG
U12 Branch Point Sequence:
TTCCTTCTAGTT
Flanking Amino Acid:
RGSSLAEQRKNVTYEDPQAV
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
65.1
41.6
Major BPS
45.1
-0.3
1.7
47.8
45.7
Major PPT
88.4
0.86
0.7
83.9
24.2
Minor 5ss
47.4
-0.3
2.4
57.6
41.4
Minor BPS
46.2
-0.2
1.8
65.16
40.2

Associated Gene:

Gene:
TOM1L2
Ensembl Gene ID:
ENSAPLG00000008391
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031612
2856686 - 2886550
29865
ENSAPLT00000028754
2856813 - 2886550
29738
ENSAPLT00000008771
2848363 - 2885550
37188
ENSAPLT00000043210
2855635 - 2885550
29916
ENSAPLT00000034159
2856686 - 2886550
29865