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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2873898_2876567_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2873898 - 2876567
Intron Length:
2670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGTGGC
5'SS Class:
major
3'SS Sequence:
GTTCTCAACACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
CTGTTCTCAACA
Flanking Amino Acid:
LDVRKQNTGVRRGKGGNSDM
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
65.5
39.9
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
68.7
0.42
1
62.4
37.6
Minor 5ss
31.8
-2.1
3.4
40.2
41.3
Minor BPS
64.4
0.45
1.6
70.88
41.7

Associated Gene:

Gene:
TOM1L2
Ensembl Gene ID:
ENSAPLG00000008391
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028754
2856813 - 2886550
29738