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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_2899750_2899855_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2899750 - 2899855
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TGGTCTCTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCCCAT
U12 Branch Point Sequence:
AGGGGCTGAGCC
Flanking Amino Acid:
KDLVVGTEAKLNKSAILRKA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
65.8
40.2
Major BPS
59.9
0.25
1.3
70.1
37
Major PPT
69.7
0.44
1.1
65.7
40.9
Minor 5ss
26.2
-2.7
3.2
31.7
42.8
Minor BPS
40.7
-0.7
2
46.3
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030202
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019759
2899348 - 2900294
947