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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3002863_3004318_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3002863 - 3004318
Intron Length:
1456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAAAGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTTTTTTAAAG
Flanking Amino Acid:
ISYTIAVLYEGVLDTSAQRA
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.2
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78
0.63
1
76
36.9
Minor 5ss
30.2
-2.3
2.6
28.5
36
Minor BPS
65.7
0.35
1.5
67.62
40.4

Associated Gene:

Gene:
PEMT
Ensembl Gene ID:
ENSAPLG00000019768
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041802
2987801 - 3006075
18275