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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3034947_3039387_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
3034947 - 3039387
Intron Length:
4441

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TGG|GCTGGAGGT
5'SS Class:
weak_major
3'SS Sequence:
CTTTCCATATCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CTTTCCATATCA
Flanking Amino Acid:
LRHCGSKMWLEIKIPLSSAC
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.6
0.23
1.4
58.3
43.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
76.5
0.6
0.9
75.2
33
Minor 5ss
16.4
-3.9
3.8
21.9
37.4
Minor BPS
61.2
0.35
1.9
76.29
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018961
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034127
3032914 - 3039421
6508