About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3045526_3045841_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3045526 - 3045841
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
CCTCGCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCCTCTCACT
Flanking Amino Acid:
KKYRYCPYEKYAWVEKHFGP
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
72.7
0.56
1
75
30.1
Major PPT
76.1
0.59
0.8
68.7
31.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
46.9
-0.1
2.1
65.42
45.3

Associated Gene:

Gene:
NT5M
Ensembl Gene ID:
ENSAPLG00000008923
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009279
3045056 - 3049276
4221