About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3045903_3046201_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3045903 - 3046201
Intron Length:
299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TCTCTCGTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAT
U12 Branch Point Sequence:
AGCTTGTTATCT
Flanking Amino Acid:
EAVKQMANLADTDVFICTSP
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.8
39.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
72.2
0.5
1
68.7
37.2
Minor 5ss
30.9
-2.2
2.6
29.8
36.6
Minor BPS
47.3
-0.1
2.2
66.22
44.6

Associated Gene:

Gene:
NT5M
Ensembl Gene ID:
ENSAPLG00000008923
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009279
3045056 - 3049276
4221