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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3051408_3054882_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3051408 - 3054882
Intron Length:
3475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACCGCC
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AAAGCTTTAAAT
Flanking Amino Acid:
RQQRAAALGPRFVKFSMPSI
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.4
0.48
1.2
60.2
39.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.8
0.65
0.9
77.1
37.1
Minor 5ss
37.7
-1.4
3.3
50.9
45.8
Minor BPS
59.4
0.37
1.5
69.84
40.7

Associated Gene:

Gene:
COPS3
Ensembl Gene ID:
ENSAPLG00000004443
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004605
3051202 - 3062126
10925