Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3053128_3053213_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3053128 - 3053213

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTTTGTAGG

5'SS Class:

major

3'SS Sequence:

TTTTGTATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

TGTTTTGTATTT

Flanking Amino Acid:

MLWGMLPFPQGQMTQLCELI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

64.7

0.35

1.2

57.4

46.9

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

87.9

0.85

0.8

85.7

33.4

Minor 5ss

37.1

-1.5

2.4

35.3

40.9

Minor BPS

47.8

-0

2.2

71.36

40.7

Associated Gene:

Gene:

COPS3

Ensembl Gene ID:

ENSAPLG00000004443

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024312

3052333 - 3062126

9794