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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3056063_3056815_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3056063 - 3056815
Intron Length:
753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTATAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AATTTATGAAAA
Flanking Amino Acid:
LTSIHADLCQLCLLAKCFKP
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
85.4
0.8
0.7
80.8
31.3
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
49
-0
1.8
62.69
36.3

Associated Gene:

Gene:
COPS3
Ensembl Gene ID:
ENSAPLG00000004443
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024312
3052333 - 3062126
9794
ENSAPLT00000019008
3050981 - 3062126
11146
ENSAPLT00000004605
3051202 - 3062126
10925