Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3056996_3058262_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3056996 - 3058262

Intron Length:

1267

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTTTC

5'SS Class:

strong_major

3'SS Sequence:

TTCTCTTGCTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

GTATATTAAACT

Flanking Amino Acid:

FERALYFYEQAITTPAMAVS

Intron Amino Acid Position:

215

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

1.1

82.3

32.2

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

75.9

0.58

0.8

76.6

Minor 5ss

51.2

0.04

2.5

70.2

40.4

Minor BPS

55.8

0.26

1.9

74.57

41.9

Associated Gene:

Gene:

COPS3

Ensembl Gene ID:

ENSAPLG00000004443

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024312

3052333 - 3062126

9794

ENSAPLT00000019008

3050981 - 3062126

11146

ENSAPLT00000004605

3051202 - 3062126

10925