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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3059477_3060415_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3059477 - 3060415
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATGC
5'SS Class:
strong_major
3'SS Sequence:
TTCTAAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GCTTTCTAAATT
Flanking Amino Acid:
YKKNIQRLTKTFLTLSLQDM
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
75.9
34.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
78.4
0.64
0.9
74.8
38.6
Minor 5ss
38.3
-1.3
3.1
50.9
45.7
Minor BPS
62.7
0.48
1.7
75.64
41.8

Associated Gene:

Gene:
COPS3
Ensembl Gene ID:
ENSAPLG00000004443
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019008
3050981 - 3062126
11146
ENSAPLT00000004605
3051202 - 3062126
10925
ENSAPLT00000024312
3052333 - 3062126
9794