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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3060503_3060844_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3060503 - 3060844
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGACTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CCTTTCTTATTT
Flanking Amino Acid:
QEAEKYVLHMIEDGEIFASI
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
77.2
37.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
90.7
0.92
0.7
89.4
25.6
Minor 5ss
38
-1.3
3.3
54.4
43.7
Minor BPS
62.5
0.47
1.6
74.56
43.3

Associated Gene:

Gene:
COPS3
Ensembl Gene ID:
ENSAPLG00000004443
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019008
3050981 - 3062126
11146
ENSAPLT00000004605
3051202 - 3062126
10925
ENSAPLT00000024312
3052333 - 3062126
9794