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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3061659_3061907_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3061659 - 3061907
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TGGTTCTAAAGA
Flanking Amino Acid:
ITVNPQFVQKSMGSQEDDSG
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1.1
81.4
32.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
88.6
0.87
0.7
80.8
31.2
Minor 5ss
39.9
-1.1
3.3
57.8
46.8
Minor BPS
50.3
0.01
2
63.04
43.6

Associated Gene:

Gene:
COPS3
Ensembl Gene ID:
ENSAPLG00000004443
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024312
3052333 - 3062126
9794
ENSAPLT00000019008
3050981 - 3062126
11146
ENSAPLT00000004605
3051202 - 3062126
10925