About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3067422_3068023_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3067422 - 3068023
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCAAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTCACGTTGAAT
Flanking Amino Acid:
PGPKKSDMCEGCRSLAGGHP
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.5
1.15
0.7
85.4
29.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
83.6
0.76
0.7
82.4
28.3
Minor 5ss
22.7
-3.1
3.8
32.2
42.5
Minor BPS
49.2
0.02
2.2
73.02
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004124
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004263
3066303 - 3074651
8349