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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3070403_3070590_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3070403 - 3070590
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATTTATAACA
Flanking Amino Acid:
DTLVQMEKLADLKEESEGWD
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
80.3
27.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.7
0.6
0.9
72.6
37.6
Minor 5ss
35.1
-1.7
3.1
48.3
47.4
Minor BPS
61.2
0.35
1.5
71.2
34.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004124
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004263
3066303 - 3074651
8349