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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3071790_3072129_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3071790 - 3072129
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTAGAAAC
5'SS Class:
major
3'SS Sequence:
CTTCCTTCTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
TTTCTCTCAACA
Flanking Amino Acid:
LVQSAFDVLRTMLPVGCVRI
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.2
67.2
38.3
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
80.6
0.69
0.7
73.4
31.6
Minor 5ss
29.7
-2.3
2.6
28.7
35.4
Minor BPS
70.6
0.64
1.5
81.1
33.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004124
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004263
3066303 - 3074651
8349