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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3072740_3073562_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3072740 - 3073562
Intron Length:
823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGATTTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTTTCTTACCC
Flanking Amino Acid:
TSGSPVAADRVGPTILNKIE
Intron Amino Acid Position:
478

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.3
0.64
0.9
73.1
36.9
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
70.4
0.62
1.6
78.59
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004124
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004263
3066303 - 3074651
8349