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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3073669_3074449_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3073669 - 3074449
Intron Length:
781

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
GTAATAGTGACA
Flanking Amino Acid:
CLVCLKEEWMNKVKVLFKFT
Intron Amino Acid Position:
513

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
86.3
0.82
0.8
81.7
30.4
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
41.9
-0.6
2.2
53.38
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004124
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004263
3066303 - 3074651
8349