Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3077854_3077969_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3077854 - 3077969

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGGCGC

5'SS Class:

major

3'SS Sequence:

TGTGTTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTGTCAG

U12 Branch Point Sequence:

TGGCTGTCAGCC

Flanking Amino Acid:

GSQIGLLRHAGIQVRHDQES

Intron Amino Acid Position:

138

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.2

0.55

55.2

43.9

Major BPS

49.4

-0

1.7

60.7

45.9

Major PPT

81.7

0.71

0.8

77.2

37.1

Minor 5ss

26.1

-2.7

3.1

33.6

41.9

Minor BPS

39.3

-0.8

2.2

48.45

41.3

Associated Gene:

Gene:

PLD6

Ensembl Gene ID:

ENSAPLG00000004112

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004203

3077442 - 3078211

770