Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3089269_3090455_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3089269 - 3090455

Intron Length:

1187

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTTTC

5'SS Class:

strong_major

3'SS Sequence:

TCTCCTCCAACAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TTTTCTTTATTT

Flanking Amino Acid:

SRQLRNIRSKSVIEQVSWDN

Intron Amino Acid Position:

2309

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.4

1.02

0.7

87.4

21.4

Major BPS

83.9

0.84

73.9

41.3

Major PPT

74.5

0.55

0.8

69.8

29.5

Minor 5ss

39.3

-1.2

2.9

45.2

Minor BPS

76.2

0.9

1.4

91.47

32.2

Associated Gene:

Gene:

MPRIP

Ensembl Gene ID:

ENSAPLG00000030840

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039924

3085803 - 3129890

44088

ENSAPLT00000027217

3085803 - 3147269

61467

ENSAPLT00000047217

3085803 - 3147269

61467

ENSAPLT00000020567

3086628 - 3142246

55619

ENSAPLT00000046823

3085803 - 3122407

36605

ENSAPLT00000046605

3085803 - 3147269

61467