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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3092876_3093495_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3092876 - 3093495
Intron Length:
620

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGACCA
5'SS Class:
major
3'SS Sequence:
GTCTCCGTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTCAC
U12 Branch Point Sequence:
GGGGAGGTCACT
Flanking Amino Acid:
ADIEALRRQYLEELQSVQRE
Intron Amino Acid Position:
801

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.2
0.43
1.1
58.6
40.3
Major BPS
51
0.02
1.3
54.8
42.1
Major PPT
65
0.34
1.1
57.5
43.2
Minor 5ss
35.2
-1.7
3.2
50.8
45
Minor BPS
30.9
-1.4
2.6
45.68
45.4

Associated Gene:

Gene:
MPRIP
Ensembl Gene ID:
ENSAPLG00000030840
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021195
3085803 - 3147269
61467
ENSAPLT00000046605
3085803 - 3147269
61467
ENSAPLT00000020567
3086628 - 3142246
55619
ENSAPLT00000044034
3082032 - 3147269
65238
ENSAPLT00000047217
3085803 - 3147269
61467
ENSAPLT00000003376
3082032 - 3147269
65238
ENSAPLT00000039924
3085803 - 3129890
44088
ENSAPLT00000027217
3085803 - 3147269
61467
ENSAPLT00000046823
3085803 - 3122407
36605