Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3112263_3112398_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3112263 - 3112398

Intron Length:

136

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAC|GTAAGGCCA

5'SS Class:

major

3'SS Sequence:

CTGCTCTCCCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

CAGCTCTGAGCC

Flanking Amino Acid:

VQRNYGFQIHTKEGEFTLSA

Intron Amino Acid Position:

442

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.3

0.5

1.3

63.2

42.9

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

73.7

0.53

0.8

65.3

36.2

Minor 5ss

32.4

-2

3.3

39.2

39.4

Minor BPS

45.4

-0.3

1.7

49.58

40.5

Associated Gene:

Gene:

MPRIP

Ensembl Gene ID:

ENSAPLG00000030840

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021195

3085803 - 3147269

61467

ENSAPLT00000046605

3085803 - 3147269

61467

ENSAPLT00000020567

3086628 - 3142246

55619

ENSAPLT00000044034

3082032 - 3147269

65238

ENSAPLT00000003376

3082032 - 3147269

65238

ENSAPLT00000039924

3085803 - 3129890

44088

ENSAPLT00000047217

3085803 - 3147269

61467

ENSAPLT00000027217

3085803 - 3147269

61467

ENSAPLT00000046823

3085803 - 3122407

36605