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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3113612_3116186_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3113612 - 3116186
Intron Length:
2575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCCAG
5'SS Class:
major
3'SS Sequence:
TCCTTCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GCAGCTCTGACC
Flanking Amino Acid:
DRRSTESSMTPDLLNFKKGW
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1.1
56.2
44.5
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
85.7
0.8
0.7
80.4
24.9
Minor 5ss
32.3
-2
3
39.3
46
Minor BPS
46.2
-0.3
1.7
51.5
39.9

Associated Gene:

Gene:
MPRIP
Ensembl Gene ID:
ENSAPLG00000030840
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027217
3085803 - 3147269
61467
ENSAPLT00000046823
3085803 - 3122407
36605
ENSAPLT00000021195
3085803 - 3147269
61467
ENSAPLT00000046605
3085803 - 3147269
61467
ENSAPLT00000020567
3086628 - 3142246
55619
ENSAPLT00000044034
3082032 - 3147269
65238
ENSAPLT00000003376
3082032 - 3147269
65238
ENSAPLT00000039924
3085803 - 3129890
44088
ENSAPLT00000047217
3085803 - 3147269
61467