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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3116902_3118687_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3116902 - 3118687
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGGTGCAG
5'SS Class:
weak_major
3'SS Sequence:
CTCTGTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAA
U12 Branch Point Sequence:
TTTCCCTTTCCT
Flanking Amino Acid:
LISISSRRTTWRSQVIEKFE
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55
0.12
1.1
42
40.3
Major BPS
70.6
0.51
1.1
71.6
36.4
Major PPT
81.4
0.71
0.8
72.6
37.7
Minor 5ss
23.5
-3.1
3.2
25.4
39.5
Minor BPS
47.4
-0.1
3.6
86.01
39.8

Associated Gene:

Gene:
MPRIP
Ensembl Gene ID:
ENSAPLG00000030840
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046823
3085803 - 3122407
36605