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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3118797_3122170_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3118797 - 3122170
Intron Length:
3374

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TGTTCATTCATT
Flanking Amino Acid:
MSEGLVALHLLLL
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.5
0.93
0.9
76.5
32.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
88.9
0.88
0.7
81.2
36.5
Minor 5ss
29.5
-2.3
3.5
40.1
46.3
Minor BPS
59.9
0.39
2
81.98
39.5

Associated Gene:

Gene:
MPRIP
Ensembl Gene ID:
ENSAPLG00000030840
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046823
3085803 - 3122407
36605