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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3122408_3122527_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3122408 - 3122527
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTTA
5'SS Class:
major
3'SS Sequence:
ACTCGAAGAGCAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
TCTCTCTGAACT
Flanking Amino Acid:
SPPSPSTPNNSCPMHKDSGS
Intron Amino Acid Position:
204

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
69.2
38
Major BPS
69.8
0.49
1
61
37.5
Major PPT
51.7
0.04
1.1
45.1
39.7
Minor 5ss
38.6
-1.3
3.6
55.4
48.8
Minor BPS
68.6
0.66
1.4
82.07
39.1

Associated Gene:

Gene:
MPRIP
Ensembl Gene ID:
ENSAPLG00000030840
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021195
3085803 - 3147269
61467
ENSAPLT00000020567
3086628 - 3142246
55619
ENSAPLT00000047217
3085803 - 3147269
61467
ENSAPLT00000003376
3082032 - 3147269
65238
ENSAPLT00000044034
3082032 - 3147269
65238
ENSAPLT00000039924
3085803 - 3129890
44088