About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3129470_3142204_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3129470 - 3142204
Intron Length:
12735

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGAGCT
5'SS Class:
major
3'SS Sequence:
CCTTCCCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTCTCCTTACGC
Flanking Amino Acid:
EASHGMPSACPTTLPQGTIN
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
65.5
38.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
79.7
0.67
0.7
72.6
25.7
Minor 5ss
35.1
-1.7
3.5
49.7
46.1
Minor BPS
54.9
0.13
2
65.58
46.5

Associated Gene:

Gene:
MPRIP
Ensembl Gene ID:
ENSAPLG00000030840
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020567
3086628 - 3142246
55619