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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3129470_3146562_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3129470 - 3146562
Intron Length:
17093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCCCCTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CTCTCCTTACGC
Flanking Amino Acid:
MPTTLPQGTIN
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
76.7
31.8
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
79.7
0.67
0.7
72.6
25.7
Minor 5ss
30
-2.3
3.2
38.4
40.8
Minor BPS
54.9
0.13
2
65.58
46.5

Associated Gene:

Gene:
MPRIP
Ensembl Gene ID:
ENSAPLG00000030840
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044034
3082032 - 3147269
65238
ENSAPLT00000027217
3085803 - 3147269
61467
ENSAPLT00000021195
3085803 - 3147269
61467
ENSAPLT00000047217
3085803 - 3147269
61467
ENSAPLT00000003376
3082032 - 3147269
65238
ENSAPLT00000046605
3085803 - 3147269
61467