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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3168933_3171529_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3168933 - 3171529
Intron Length:
2597

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTGTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
AATTCTTCCACT
Flanking Amino Acid:
LPIVACFHLKRFEHSAKLRR
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.5
27.6
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
79
0.65
0.9
69.8
41
Minor 5ss
42.2
-0.9
2.7
50.9
39.6
Minor BPS
54.5
0.22
2
75.85
40.8

Associated Gene:

Gene:
USP22
Ensembl Gene ID:
ENSAPLG00000002524
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037155
3167127 - 3245202
78076
ENSAPLT00000021997
3167127 - 3257734
90608
ENSAPLT00000020296
3167127 - 3245202
78076
ENSAPLT00000002558
3167127 - 3243412
76286