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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3174357_3181002_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3174357 - 3181002
Intron Length:
6646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TGCATTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
AGATTTTTGACT
Flanking Amino Acid:
ALDVLHRHCKGDDNGKKANN
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
75.4
0.57
0.9
66
40.8
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
65.4
0.57
1.2
74.11
36.5

Associated Gene:

Gene:
USP22
Ensembl Gene ID:
ENSAPLG00000002524
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021997
3167127 - 3257734
90608
ENSAPLT00000020296
3167127 - 3245202
78076
ENSAPLT00000002558
3167127 - 3243412
76286
ENSAPLT00000037155
3167127 - 3245202
78076