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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3181151_3187925_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3181151 - 3187925
Intron Length:
6775

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTGAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAA
U12 Branch Point Sequence:
AACTTGTTAACA
Flanking Amino Acid:
VCEMSTLFQEFYSGHRSPHI
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
84
26.7
Major BPS
72.1
0.55
1.2
63.7
43.9
Major PPT
72.2
0.5
1
70
40.2
Minor 5ss
29.9
-2.3
3.2
41.3
45.2
Minor BPS
56
0.18
2.1
66.22
40.3

Associated Gene:

Gene:
USP22
Ensembl Gene ID:
ENSAPLG00000002524
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021997
3167127 - 3257734
90608
ENSAPLT00000020296
3167127 - 3245202
78076
ENSAPLT00000002558
3167127 - 3243412
76286
ENSAPLT00000037155
3167127 - 3245202
78076