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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3188096_3206952_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3188096 - 3206952
Intron Length:
18857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCTGTCTTTATA
Flanking Amino Acid:
RRKITTNCTIGLRGLINLGN
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
81.5
0.71
0.8
76.3
32.4
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
55.3
0.16
1.7
65.88
41.1

Associated Gene:

Gene:
USP22
Ensembl Gene ID:
ENSAPLG00000002524
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021997
3167127 - 3257734
90608
ENSAPLT00000020296
3167127 - 3245202
78076
ENSAPLT00000002558
3167127 - 3243412
76286
ENSAPLT00000037155
3167127 - 3245202
78076