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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3223830_3243409_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3223830 - 3243409
Intron Length:
19580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATAG
Flanking Amino Acid:
MAKSCICHMCG
Intron Amino Acid Position:
2

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.77
0.9
81.4
31.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
43.6
-0.7
2.6
56.3
42.5
Minor BPS
56.8
0.07
1.8
63.99
43.9

Associated Gene:

Gene:
USP22
Ensembl Gene ID:
ENSAPLG00000002524
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002558
3167127 - 3243412
76286