About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3278510_3284500_F


Intron Information:

Intron Rank:
1

Intron Class:
major

Intron Phase:
2

Intron Coordinates:
3278510 - 3284500

Intron Length:
5991

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAGGGCCC

5'SS Class:
major

3'SS Sequence:
CTTATGGCTCTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
CTTTCAT

U12 Branch Point Sequence:
TTTCCTTTCATC

Flanking Amino Acid:
MVTAAGRKTAEKGRLM

Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
77.7
0.65
1.1
64.9
37.8

Major BPS
87.6
0.93
0.9
89.3
26

Major PPT
67.7
0.4
1
58.3
43

Minor 5ss
30.6
-2.2
3.5
42.1
44.9

Minor BPS
63
0.39
1.7
75.34
35.5

Associated Gene:

Gene:
DHRS7B

Ensembl Gene ID:

Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

3278490 - 3289170
10681