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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3293788_3301068_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3293788 - 3301068
Intron Length:
7281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TTCCCGTTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GTAGTTTTAATC
Flanking Amino Acid:
STNSGGGGRERVTLSSTDCY
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
72.9
0.51
0.9
65.7
39.7
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
59.4
0.28
1.3
62.91
37.1

Associated Gene:

Gene:
TMEM11
Ensembl Gene ID:
ENSAPLG00000028416
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018164
3291961 - 3301136
9176