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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3449225_3449320_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3449225 - 3449320
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCCCGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAC
U12 Branch Point Sequence:
GTTTCTGTGTCT
Flanking Amino Acid:
RLSDKMAPVPVPLKDMKLMD
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
69.3
35.8
Major BPS
56.5
0.16
1.1
48.6
36.6
Major PPT
74.8
0.56
0.8
68.9
31.6
Minor 5ss
28.1
-2.5
3
27.7
36.2
Minor BPS
40.9
-0.6
3.7
75.31
42

Associated Gene:

Gene:
ATP5MF
Ensembl Gene ID:
ENSAPLG00000007021
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007279
3449092 - 3450667
1576