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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3449429_3450151_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3449429 - 3450151
Intron Length:
723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATGAAA
U12 Branch Point Sequence:
TTCTCCTACACA
Flanking Amino Acid:
PGGIGGALRRGYERYYNKYI
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
57.6
0.19
1.3
67.9
36.3
Major PPT
77.1
0.61
0.8
72.5
31.2
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
58.9
0.27
2.1
74.7
43.3

Associated Gene:

Gene:
ATP5MF
Ensembl Gene ID:
ENSAPLG00000007021
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007279
3449092 - 3450667
1576