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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3450269_3450638_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3450269 - 3450638
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TACATCAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATCAATA
Flanking Amino Acid:
ISYMWSYSHVKHDRRRKYH*
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
66.3
0.37
1
58.9
40.6
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
57.9
0.24
1.8
74.08
37.3

Associated Gene:

Gene:
ATP5MF
Ensembl Gene ID:
ENSAPLG00000007021
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007279
3449092 - 3450667
1576