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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3453079_3454665_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3453079 - 3454665
Intron Length:
1587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCCGTCCTAACT
Flanking Amino Acid:
RPLEQVTCYKCGEKGHYANR
Intron Amino Acid Position:
222

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79.8
35.1
Major BPS
72
0.55
1
71.8
31.4
Major PPT
92.2
0.95
0.5
92.5
17.5
Minor 5ss
36
-1.6
3
50.1
46.1
Minor BPS
54.9
0.23
1.8
71.51
45.7

Associated Gene:

Gene:
CPSF4
Ensembl Gene ID:
ENSAPLG00000018571
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046939
3453010 - 3458969
5960