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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3456507_3457298_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3456507 - 3457298
Intron Length:
792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GCCTTTGGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAC
U12 Branch Point Sequence:
GTACAATTGACT
Flanking Amino Acid:
MPECYFYSKFGECSNKECPF
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66.2
39.3
Major BPS
69.9
0.49
0.9
61.1
36.4
Major PPT
69.5
0.44
1
63.5
41.9
Minor 5ss
29.7
-2.3
3.5
37.8
42.4
Minor BPS
49.2
0.02
1.8
69.22
40.7

Associated Gene:

Gene:
CPSF4
Ensembl Gene ID:
ENSAPLG00000018571
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046939
3453010 - 3458969
5960