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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3462809_3462992_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3462809 - 3462992
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
ATGTCCATATTT
Flanking Amino Acid:
SKQGDLEGAKSLLPALAKRS
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
83.2
0.75
0.9
77.5
36.5
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
55.5
0.25
1.9
75.29
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006862
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007143
3458872 - 3464116
5245