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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3463574_3463780_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3463574 - 3463780
Intron Length:
207

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CTAATCAAATTC
Flanking Amino Acid:
AAQYPPKFDRYKSKNPYLVK
Intron Amino Acid Position:
811

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
66.6
39.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
92.7
0.96
0.6
88.4
21.2
Minor 5ss
27.1
-2.6
3
26.2
36.9
Minor BPS
38
-0.9
1.9
43.92
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006862
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007143
3458872 - 3464116
5245