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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3464512_3464852_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3464512 - 3464852
Intron Length:
341

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAAAT
U12 Branch Point Sequence:
CTTGGCTGAAAT
Flanking Amino Acid:
CRVPKSKLEVGRIIECTHCG
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
54.8
0.12
1.3
62.7
40.5
Major PPT
80.3
0.68
0.8
73
37.4
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
48.1
-0
2.1
69.82
46.7

Associated Gene:

Gene:
BUD31
Ensembl Gene ID:
ENSAPLG00000006748
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007005
3464461 - 3465905
1445