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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_15_3465344_3465811_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3465344 - 3465811
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGGCC
5'SS Class:
major
3'SS Sequence:
TGTTCCCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TCTGCTGGGATC
Flanking Amino Acid:
LDELDQKMREAETEPHEGKR
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.2
68.8
38
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
78.5
0.64
0.8
69.8
36.6
Minor 5ss
36
-1.6
3.6
50.9
45.8
Minor BPS
42.1
-0.6
2.1
53.03
39.8

Associated Gene:

Gene:
BUD31
Ensembl Gene ID:
ENSAPLG00000006748
Chromosome:
15

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007005
3464461 - 3465905
1445